A full cryptanalysis of the BUGS Algorithm still remains to be done, however a first attempt to conduct a Cryptanalysis was done for Sylvain's MSc Thesis in 2009 which is available from here and contains all the details of the attacks.
Below is a summary of what was done and found.
Attacks Selection
The thesis only focused on the encryption functions as a target and the following attacks were discussed:
Statistical and Probabilistic attack
Confusion
A script was designed to take a ciphertext input and generate the following:
Diffusion
Another script was designed to display a file as a picture with the following rule: to read the file as a bit stream and each time a 1 was found then a black pixel would be marked on the picture and for a value of 0 a white pixel will be used. With a parameter to add a new line in the picture every 512 bits.
No pattern was found and this was an indication of a good diffusion for the cipher indicates it is not apparently vulnerable to a bad diffusion attack. (POSITIVE)
Known and Chosen Plain text attacks
Those attacks targeted the shuffling encryption function. Although it is not used alone in the cipher default mode of operation, it is available as a standalone option mode and appears to be vulnerable to known and chosen plaintext attacks. As such, from this cryptanalysis we can recommend against using this cipher in that optional operation mode. (NEGATIVE in non standard mode)
Unrestricted XOR-SUM uniqueness Attack
The fourth attack while targeting the same encryption function attempted to use originality to identify characteristics between a plaintext and a corresponding ciphertext by considering a potentially new form of attack on XOR uniqueness properties. More work is required to confirm this new form of attack could have any value and this will be discussed in THIS SECTION
Linear Cryptanalysis Attack
The last attack, using a high order linear cryptanalysis framework, suggested it may be possible to gather some information on the keys used to generate the ciphertext, but no obvious LC related attacks were found. (POSITIVE)
Further attacks should also be considered as they may apply to this cipher:
To conclude, although some potential weaknesses were highlighted, this light cryptanalysis did not show any obvious security issues.